Closed RiboRings closed 4 months ago
Hey, I am currently trying to add some data parameters however I'm not sure which one could be added (and not considered a visual one) so here is a quick list I made.
AbundancePlot :
AbundanceDensityPlot :
RowTreePlot :
It feels like a lot could be also visual parameters so I want to be sure which to add
AbundancePlot:
use_relative = FALSE
, then the assay.type will modify the plot. But probably it is preferable to visualise all kinds of assays with the heatmap panel instead of the abundance plot one. Instead of assay.type, how about adding a checkbox for the use_relative argument? (data box)AbundanceDensityPlot
layout = "density"
, so you could play and try to hide shape_by based on layout value (visual box)RowTreePlot
Some other possible ideas for the RDAPlot:
Would be good to coordinate with mia/miaVIz: if some of these options could/should be made available there, then just called here, that might be preferable?
These are already existing parameters in miaViz functions, we are just creating ways to change these parameters in our visualization plot.
Completed with https://github.com/microbiome/iSEEtree/pull/28
Most of the data boxes of the current panels are still empty. Meaningful data parameters should be discussed and added.
The main difference between data box and visualisation box is that data boxes should contain parameters that significantly change the data in a plot (number of points, values of the axes, measured metric, transformations, etc.), whereas visualisation parameters just change aesthetics (shape by, colour by, etc.).