New demo data set

[antagomir]

Add new data set in mia.

Clone mia R package https://github.com/microbiome/mia

Test the following: devtools::test() devtools::build() devtools::run_examples()

Use the data from Tengeler et al. 2020

Save the TreeSummarizedExperiment data set in rds format in: https://github.com/microbiome/mia/blob/master/data/

Document the data set here, include reference to the original publication: https://github.com/microbiome/mia/blob/master/R/mia.R then run devtools::document()

Test that the data set can be loaded after devtools::load_all() or devtools::install() with data(Tengeler2020)

Open new PR to mia with these changes.

Remember to store the clean source code that converts the original data into TreeSE.

[antagomir]

The Wickham & Bryan online resource can help with building R packages and adding data: R packages

[antagomir]

Check if the above script import can be simplified.

In particular, check if you could use directly the new function https://microbiome.github.io/mia/reference/makeTreeSEFromBiom.html

[Daenarys8]

I am raising a quick PR for new demo dataset but unable to get a good description of the Tengeler2020 dataset. Any pointers?

[antagomir]

Hmm picking key points from the abstract of data description of the original publication?