microbiome / mia

Microbiome analysis
https://microbiome.github.io/mia/
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Deprecate Taxa names #393

Closed antagomir closed 1 year ago

antagomir commented 1 year ago

Deprecate the Taxa names (listed below). These already have a new alias Features that should then become the new accepted name.

For justification, see discussion in OMA issue 302.

These functions at least:

Check if there are other similarly named functions in addition to these in mia.

Also remember to update examples, unit tests and vignettes accordingly.

After implementing the change, check if OMA or other mia packages (miaViz, miaSim, miaTime) will need an update on this, either in their R functions or in their vignettes.