Closed antagomir closed 11 months ago
Revise and clarify the biom import examples: https://microbiome.github.io/mia/reference/makeTreeSEFromBiom.html
ignore the SE, make all examples import directly to TreeSE
do we need both loadFromBiom and makeTreeSEFromBiom? or would it be enough keep one of these?
loadFromBiom
makeTreeSEFromBiom
Also the loadFromBiom readily imports TreeSE, not SE as the example seems to claim.
The TreeSE objects should be called "tse" (not "se")
Revise and clarify the biom import examples: https://microbiome.github.io/mia/reference/makeTreeSEFromBiom.html
ignore the SE, make all examples import directly to TreeSE
do we need both
loadFromBiom
andmakeTreeSEFromBiom
? or would it be enough keep one of these?