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microbiome / mia

Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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biom import examples #425

Closed antagomir closed 11 months ago

antagomir commented 1 year ago

Revise and clarify the biom import examples: https://microbiome.github.io/mia/reference/makeTreeSEFromBiom.html

  1. ignore the SE, make all examples import directly to TreeSE

  2. do we need both loadFromBiom and makeTreeSEFromBiom? or would it be enough keep one of these?

antagomir commented 1 year ago

Also the loadFromBiom readily imports TreeSE, not SE as the example seems to claim.

The TreeSE objects should be called "tse" (not "se")