Closed antagomir closed 10 months ago
I think this simple conversion should work out-of-the box:
library(mia) data(enterotype, package="mia") makePhyloseqFromTreeSE(enterotype)
However it produces the following error:
Error in validObject(.Object) : invalid class “phyloseq” object: Component taxa/OTU names do not match. Taxa indices are critical to analysis. Try taxa_names()
-> Diagnose and fix?
I think this simple conversion should work out-of-the box:
However it produces the following error:
Error in validObject(.Object) : invalid class “phyloseq” object: Component taxa/OTU names do not match. Taxa indices are critical to analysis. Try taxa_names()
-> Diagnose and fix?