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microbiome / mia

Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
46 stars 27 forks source link

Deprecation messages #439

Closed TuomasBorman closed 10 months ago

TuomasBorman commented 11 months ago

It seems that deprecation messages occurs in wrong places. For example, mergeFeaturesByRank gives deprecation message about agglomerateByRank. Of course it should not.

There are also some other functions that use deprecated functions internally --> gives warning. Run tests and you will see all the warnings that must be removed (assuming that tests are using the latest naming scheme which they should).

TuomasBorman commented 11 months ago

@ake123 Do you have time to check this?

TuomasBorman commented 10 months ago

What is the status? Is everything done? @ake123

ake123 commented 10 months ago

It's done!