rename calculateDPCoA, calculateNMDS, calculateRDA, calculateCCA

microbiome / mia

Microbiome analysis

https://microbiome.github.io/mia/

Artistic License 2.0

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rename calculateDPCoA, calculateNMDS, calculateRDA, calculateCCA #524

Closed thpralas closed 1 month ago

thpralas commented 2 months ago

This PR makes the following naming modifications :

calculateDPCoA --> getDPCoA
calculateNMDS --> getNMDS
calculateRDA --> getRDA
calculateCCA --> getCCA

TuomasBorman commented 2 months ago

Thanks! Certain ordination methods that we use come from scater package. They use calculate and run, for instance, calculatePCA and runMDS. That is why we have to think about if we

Keep these unchanged
Keep calculate and run aliases
Replace calculate and run with get and add like done in this PR
Add get and run aliases also for scater ordination methods.

I have to think about this little bit