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microbiome / mia

Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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R CMD Check contains NOTES #532

Open TuomasBorman opened 2 months ago

TuomasBorman commented 2 months ago

Hi,

currently check contains NOTES. Especially it seems that syntax of list in roxygen has changed.

  1. Run devtools::check()
  2. List probelmatic things to this issue
  3. Let's discuss what we can do about them. (Everything cannot be solved)
  4. Fix
ake123 commented 2 months ago

Here is the result after running devtools::check()

❯ checking package dependencies ... NOTE
  Imports includes 21 non-default packages.
  Importing from so many packages makes the package vulnerable to any of
  them becoming unavailable.  Move as many as possible to Suggests and
  use conditionally.

❯ checking top-level files ... NOTE
  Non-standard file/directory found at top level:
    ‘CONTRIBUTING.md’

❯ checking Rd cross-references ... NOTE
  Unknown package ‘https’ in Rd xrefs
TuomasBorman commented 2 months ago

Do you have the latest versions? In addition to those NOTEs that you get, I get also NOTEs about roxygen

See the latest workflow run

https://github.com/microbiome/mia/actions/runs/8849563656/job/24301848155