If remove_empty_ranks = TRUE, those columns that have only NA values are removed. This includes also those columns that are not ranks. As this function is related to taxonomy and agglomeration, I think it should only remove rank columns. --> Modify so that only rank columns with only NAs are removed.
If
remove_empty_ranks = TRUE, those columns that have only NA values are removed. This includes also those columns that are not ranks. As this function is related to taxonomy and agglomeration, I think it should only remove rank columns. --> Modify so that only rank columns with only NAs are removed.