prevalence functions and as_relative parameter

microbiome / mia

Microbiome analysis

https://microbiome.github.io/mia/

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prevalence functions and as_relative parameter #577

Closed TuomasBorman closed 1 day ago

TuomasBorman commented 3 weeks ago

Currently, for example agglomerateByPrevalence functions has as_relative parameter that applies relative transformation to assay. However, this might be confusing. --> Remove as_relative option and calculate the prevalence directly from the assay specified by user.