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microbiome / mia

Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
50 stars 27 forks source link

Improve support for spaces in variable names #650

Closed TuomasBorman closed 3 weeks ago

TuomasBorman commented 1 month ago

I noticed that formula creation in dbRDA can lead to an error when variable names have spaces. Now it is ensured that, the formula works with spaces.

Moreover, meltSE replaced spaces with dots. Now the data is melted so that variable names are kept untouched.

TuomasBorman commented 1 month ago

In theory, the formula shoudl work. However, in here https://github.com/microbiome/miaViz/pull/156, there are problems in facetting and formula formatting. Check that everything works.

TuomasBorman commented 1 month ago

In theory, the formula shoudl work. However, in here microbiome/miaViz#156, there are problems in facetting and formula formatting. Check that everything works.

It seems that the problem in miaViz was related to different thing. I will still keep this as a draft since checks are failing.

TuomasBorman commented 4 weeks ago

I confirm that everything works now