Closed TuomasBorman closed 2 weeks ago
1. Add tree agglomeration to subsetByPrevalent() and subsetByRare(). Fixes this issue: https://github.com/microbiome/mia/issues/198
subsetByPrevalent()
subsetByRare()
2. Update the tree agglomeration; we used own implementation in agglomerateBy*() functions but now we utilize TreeSummarizedExperiment::subsetByLeaf(). Own implementation is still used in functions that handle matrix and tree, not TreeSE object.
agglomerateBy*()
TreeSummarizedExperiment::subsetByLeaf()
TreeSE
1. Add tree agglomeration to
subsetByPrevalent()andsubsetByRare(). Fixes this issue: https://github.com/microbiome/mia/issues/1982. Update the tree agglomeration; we used own implementation in
agglomerateBy*()functions but now we utilizeTreeSummarizedExperiment::subsetByLeaf(). Own implementation is still used in functions that handle matrix and tree, notTreeSEobject.