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microbiome / mia

Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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transformAssay and altexp #660

Open TuomasBorman opened 2 days ago

TuomasBorman commented 2 days ago

By default, transformation is applied to alternative experiments. However, if alternative experiment does not have table specified by assay.type, this leads to an error which might be hard to solve.

I suggest that altexp = NULL is the default for SCE method in transformAssay.