miaSimShiny link added - Githubissues

antagomir commented 1 year ago

Checks still failing, @YagmurSimsekk

antagomir commented 1 year ago

The error says "unable to find version master" -> does the GHA still refer to master branch? Should be easy to fix in .github/workflows yml files?

antagomir commented 1 year ago

miaSimShiny link was added to README.md I moved it to README.Rmd (I push soon) the README.md is generated (and hence rewritten) based on Rmd file..

antagomir commented 1 year ago

Ok this failed the checks so I went to see in more detail.

Changes:

Vignette used packages that were not mentioned in DESCRIPTION Suggests: field; added there now
Vignette examples are prohibitively slow for automated build checks; I reduced the number of combinations to go through in for loops drastically for demo purposes to speed up.
Some other more minor polishing

Additional updates will be neeeded but easier to do after this PR is merged.

Later PRs should be more compact in size so that the process stays more manageable.

antagomir commented 1 year ago

Ok - I had to skip vignette fixes for now to get this through. Much of the fixes would require the new features that are only available after the merge. Let's take note on the PR comments later.

microbiome / miaSim

miaSimShiny link added #57