replace deprecations with new funcs

microbiome / miaViz

Microbiome Analysis Plotting and Visualization

https://microbiome.github.io/miaViz

Artistic License 2.0

9 stars 10 forks source link

replace deprecations with new funcs #105

Closed ake123 closed 1 month ago

antagomir commented 1 month ago

@ake123 could you finalize this one so we can close?

TuomasBorman commented 1 month ago

This PR replaces agglomerateByRank with mergeFeaturesByRank, however, the mergeFeaturesByRank will be deprectated. (I have not updated Bioc devel of mia since we have still some modifications in GH that are under discussion)

Also, the cluster function will be deprecated so this PR has only old information. Sorry for that