microbiomeDB / mbio_airflow_dags

A collection of DAGs for running MicrobiomeDB data pipelines using Apache Airflow
Apache License 2.0
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write a dag for biobakerymgx #7

Open d-callan opened 3 weeks ago

d-callan commented 3 weeks ago

we should have a dag for https://github.com/microbiomeDB/biobakerymgx. it should probably work on the shotgun_metagenomics directory here, likely w its own study and processed-study files, but run fully independently of the mag dag

d-callan commented 3 weeks ago

also worth noting that this would likely mean new params, samplesheet files etc in the same dirs as mag-n-friends have them. and should consider that a new dag likely means rerunning fetchngs or something. so maybe what we actually want is to add this to mag-n-friends too, and then add a column to this file indicating which nextflow/ scientific workflows should be run per study within the dag.