This will let getCollection return phyloseq objects as well, though not by default. It also adds a flag to only return continuous metadata variables, so that passing the resulting AbundanceData object to microbiomeComputations::correlation wont fail.
This will let getCollection return phyloseq objects as well, though not by default. It also adds a flag to only return continuous metadata variables, so that passing the resulting AbundanceData object to microbiomeComputations::correlation wont fail.