WIP: adjust outputs - Githubissues

microbiomedata / ReadbasedAnalysis

0 stars 6 forks source link

WIP: adjust outputs #12

Closed scanon closed 3 years ago

scanon commented 3 years ago

Have outputs written in the execution area
Temporarily disabled the JSON output. Needs to be fixed.

We need to fix up the JSON output.

poeli commented 3 years ago

The original ${OUTPATH} comes with a user-specified path and the tools name. I suspect removing ${OUTPATH} will make the profiling tools overwrite each other's outputs.

scanon commented 3 years ago

The original ${OUTPATH} comes with a user-specified path and the tools name. I suspect removing ${OUTPATH} will make the profiling tools overwrite each other's outputs.

Each task rights into the execution space. So they won't over-write each other. Right now for the end-to-end workflow I have a separate tasks that copies the output into the user provided directory.