mflynn-lanl
commented
3 months ago I moved: /global/cfs/cdirs/m3408/refdata/gottcha2 to /global/cfs/cdirs/m3408/refdata/gottcha2_old and /global/cfs/cdirs/m3408/refdata/gottcha2_fungal/GOTTCHA2_fungal to /global/cfs/cdirs/m3408/refdata/gottcha2
From: aclum @.> Sent: Tuesday, June 11, 2024 3:53 PM To: microbiomedata/ReadbasedAnalysis @.> Cc: Flynn, Mark C @.>; Author @.> Subject: [EXTERNAL] Re: [microbiomedata/ReadbasedAnalysis] updated gottcha2 to use fungal database (PR #21)
@aclum requested changes on this pull request.
The new path doesn't exist at nersc. Please update to the correct path and provide test workflow output. I think perhaps you wanted to /refdata/gottcha2_fungal/GOTTCHA2_fungal/gottcha_db.BAVFPt.species.fna
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I will replace the files in /refdata/gottcha2/ with the files in /refdata/gottcha2_fungal/GOTTCHA2_fungal/. this way there aren't old, unused files cluttering the file system
From: aclum @.> Sent: Tuesday, June 11, 2024 3:53 PM To: microbiomedata/ReadbasedAnalysis @.> Cc: Flynn, Mark C @.>; Author @.> Subject: [EXTERNAL] Re: [microbiomedata/ReadbasedAnalysis] updated gottcha2 to use fungal database (PR #21)
@aclum requested changes on this pull request.
The new path doesn't exist at nersc. Please update to the correct path and provide test workflow output. I think perhaps you wanted to /refdata/gottcha2_fungal/GOTTCHA2_fungal/gottcha_db.BAVFPt.species.fna
— Reply to this email directly, view it on GitHubhttps://urldefense.com/v3/__https://github.com/microbiomedata/ReadbasedAnalysis/pull/21*pullrequestreview-2111513975__;Iw!!Bt8fGhp8LhKGRg!AfjVzN_2e8OahzK4ryDHRpsVbgpIhhfYPCpyCnsVtymLhsy_WDAAhMXHzHDjIAhogwDwdq2d_SzarHw1ThU5Y5Cp$, or unsubscribehttps://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AEXIUF7FUDCOOI7JOK2GHO3ZG5WWXAVCNFSM6AAAAABJEYM4QSVHI2DSMVQWIX3LMV43YUDVNRWFEZLROVSXG5CSMV3GSZLXHMZDCMJRGUYTGOJXGU__;!!Bt8fGhp8LhKGRg!AfjVzN_2e8OahzK4ryDHRpsVbgpIhhfYPCpyCnsVtymLhsy_WDAAhMXHzHDjIAhogwDwdq2d_SzarHw1Tlr9V4J4$. You are receiving this because you authored the thread.Message ID: @.***>