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microbiomedata / ReadsQC

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update rqcfilter.wdl to be compatible with new shared workflow requirements #24

Open aclum opened 1 year ago

aclum commented 1 year ago

see https://docs.google.com/document/d/1gqpopBC1ovWR7p5WFilI-Kn_BYOSVBkX4fyDg-8nlX0/edit for requirements. At a minimum we need to remove the runtime_minutes to be able to run with JAWS, note this is also filed as a bug w/JAWS since this should be ignored.

https://code.jgi.doe.gov/advanced-analysis/jaws-support/-/issues/118

aclum commented 1 year ago

Note runtime_minutes is a valid backend parameter for slurm https://cromwell.readthedocs.io/en/stable/backends/SLURM/