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microbiomedata
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WorkflowPlanning
This is primarily a repo for capturing policies and discussions around the different workflows for NMDC. This is also used for project management related pieces.
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monitor the health status for NMDC EDGE
#38
ssarrafan
closed
2 years ago
4
Add mongoDB and validation to automation workflow
#37
ssarrafan
closed
8 months ago
6
Processing of GROW data
#35
ssarrafan
closed
8 months ago
3
Proposal: include GO functional annotation in annotation workflows
#33
cmungall
closed
5 months ago
3
MetaG update from JGI
#32
hubin-keio
closed
11 months ago
5
Create a script for JSON object generation without GOLD ID.
#31
hubin-keio
closed
2 years ago
4
Post 2022 GSP Cleanup
#30
scanon
closed
5 months ago
1
Process Bioscales data in preparation for release to portal
#29
ssarrafan
closed
2 years ago
4
Process EMP500 data in preparation for release to portal
#28
ssarrafan
closed
2 years ago
6
Process MPI data in preparation for release to portal
#27
ssarrafan
closed
2 years ago
1
Edge - Install Condor for UCSD instance
#26
ssarrafan
closed
3 years ago
1
Document process and requirements needed to test workflows
#25
ssarrafan
closed
3 years ago
8
Finish end-to-end workflows for MG going from raw reads to all data products.
#24
scanon
closed
3 years ago
1
GFF3 outputs
#23
hubin-keio
opened
3 years ago
4
(WIP) Add annotation WDL files
#22
scanon
opened
4 years ago
0
First pull request for MVP metatranscriptomic pipeline
#21
mshakya
closed
4 years ago
0
Consolidate assembly pipelines
#20
scanon
closed
5 months ago
1
fix bug: bbmap array variable cannot be using as ${} File/String in c…
#19
chienchi
closed
4 years ago
0
Cromwell does not "infile" as variable. It is a bug. Use input_files …
#18
chienchi
closed
4 years ago
0
Update assembly output to _contigs.fna
#17
chienchi
closed
4 years ago
0
assembly input json use array File for fastq
#16
chienchi
closed
4 years ago
0
Update MAGs and Assembly workflow
#15
chienchi
closed
4 years ago
0
Update Assembly and MAGs workflow to support JTM dynamic worker
#14
chienchi
closed
4 years ago
0
supported JTM dynamic worker
#13
poeli
closed
4 years ago
0
Updated planning for Meta-proteomics workflow
#12
anubhav0fnu
closed
4 years ago
1
Create Task-2.1.5-2.md
#11
ghost
closed
4 years ago
0
Update Assembly workflow to JGI version
#10
chienchi
closed
4 years ago
0
read-based analysis pipeline
#9
poeli
closed
4 years ago
1
The workflow for Task2.1.2
#8
poeli
closed
4 years ago
1
Adding WDL and Docker files and run example for Task 2.1.1 and 2.1.3
#7
chienchi
closed
4 years ago
1
Update
#6
chienchi
closed
5 years ago
0
Update Task-2.1.1.md
#5
mhuntemann
closed
5 years ago
0
Cornwell v44
#4
poeli
closed
5 years ago
2
Task 2.1.2
#3
poeli
closed
5 years ago
0
List tools, databases and their licenses currently used by IMG's annotation pipeline
#2
mhuntemann
closed
5 years ago
0
Adding requirements and brief desc for Task2.1.1 and Task2.1.3
#1
chienchi
closed
5 years ago
0