turbomam
commented
2 years ago name: slot_definition
description: an element that describes how instances are related to other instances
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- OwlProfile
from_schema: https://w3id.org/linkml/meta
aliases:
- slot
- field
- property
- attribute
- column
- variable
close_mappings:
- rdf:Property
rank: 3
is_a: definition
mixins:
- slot_expression
slot_usage:
is_a:
name: is_a
description: A primary parent slot from which inheritable metaslots are propagated
range: slot_definition
mixins:
name: mixins
description: A collection of secondary parent mixin slots from which inheritable
metaslots are propagated
range: slot_definition
apply_to:
name: apply_to
range: slot_definition
disjoint_with:
name: disjoint_with
range: slot_definition
union_of:
name: union_of
range: type_definition
attributes:
singular_name:
name: singular_name
description: a name that is used in the singular form
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
slot_uri: skos:altLabel
alias: singular_name
owner: slot_definition
domain_of:
- slot_definition
range: string
domain:
name: domain
description: "defines the type of the subject of the slot. Given the following\
\ slot definition\n S1:\n domain: C1\n range: C2\nthe declaration\n\
\ X:\n S1: Y\n\nimplicitly asserts that X is an instance of C1\n"
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: domain
owner: slot_definition
domain_of:
- slot_definition
range: class_definition
slot_uri:
name: slot_uri
description: predicate of this slot for semantic web application
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- public ID
rank: 2
domain: slot_definition
ifabsent: slot_curie
alias: slot_uri
owner: slot_definition
domain_of:
- slot_definition
range: uriorcurie
multivalued:
name: multivalued
description: true means that slot can have more than one value
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- ObjectOrientedProfile
from_schema: https://w3id.org/linkml/meta
rank: 7
domain: slot_definition
inherited: true
alias: multivalued
owner: slot_definition
domain_of:
- slot_definition
range: boolean
inherited:
name: inherited
description: true means that the *value* of a slot is inherited by subclasses
comments:
- Inherited applies to slot values. Parent *slots* are always inherited by subclasses
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: inherited
owner: slot_definition
domain_of:
- slot_definition
range: boolean
readonly:
name: readonly
description: If present, slot is read only. Text explains why
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: readonly
owner: slot_definition
domain_of:
- slot_definition
range: string
ifabsent:
name: ifabsent
description: "function that provides a default value for the slot. Possible values\
\ for this slot are defined in\nlinkml_runtime.utils.ifabsent_functions.default_library:\n\
\ * [Tt]rue -- boolean True\n * [Ff]alse -- boolean False\n * int(value)\
\ -- integer value\n * str(value) -- string value\n * default_range -- schema\
\ default range\n * bnode -- blank node identifier\n * slot_uri -- URI for\
\ the slot\n * class_curie -- CURIE for the containing class\n * class_uri\
\ -- URI for the containing class"
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- sh:defaultValue
domain: slot_definition
inherited: true
alias: ifabsent
owner: slot_definition
domain_of:
- slot_definition
range: string
list_elements_unique:
name: list_elements_unique
description: If True, then there must be no duplicates in the elements of a multivalued
slot
comments:
- should only be used with multivalued slots
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: list_elements_unique
owner: slot_definition
domain_of:
- slot_definition
range: boolean
list_elements_ordered:
name: list_elements_ordered
description: If True, then the order of elements of a multivalued slot is guaranteed
to be preserved. If False, the order may still be preserved but this is not
guaranteed
comments:
- should only be used with multivalued slots
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: list_elements_ordered
owner: slot_definition
domain_of:
- slot_definition
range: boolean
shared:
name: shared
description: If True, then the relationship between the slot domain and range
is many to one or many to many
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- inverse functional
- many to one or many
domain: slot_definition
inherited: true
alias: shared
owner: slot_definition
domain_of:
- slot_definition
range: boolean
key:
name: key
description: True means that the key slot(s) uniquely identify the container.
comments:
- see also 'unique_key'
- key is inherited
- a given domain can have at most one key slot (restriction to be removed in the
future)
- identifiers and keys are mutually exclusive. A given domain cannot have both
- a key slot is automatically required. Keys cannot be optional
in_subset:
- SpecificationSubset
- BasicSubset
- RelationalModelProfile
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: key
owner: slot_definition
domain_of:
- slot_definition
range: boolean
identifier:
name: identifier
description: True means that the key slot(s) uniquely identify the container.
There can be at most one identifier or key per container
comments:
- identifier is inherited
- a key slot is automatically required. Identifiers cannot be optional
- a given domain can have at most one identifier
- identifiers and keys are mutually exclusive. A given domain cannot have both
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Identifier
aliases:
- primary key
- ID
- UID
- code
rank: 5
domain: slot_definition
inherited: true
alias: identifier
owner: slot_definition
domain_of:
- slot_definition
range: boolean
designates_type:
name: designates_type
description: True means that the key slot(s) is used to determine the instantiation
(types) relation between objects and a ClassDefinition
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- type designator
domain: slot_definition
inherited: true
alias: designates_type
owner: slot_definition
domain_of:
- slot_definition
range: boolean
alias:
name: alias
description: the name used for a slot in the context of its owning class. If
present, this is used instead of the actual slot name.
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
rank: 6
domain: slot_definition
slot_uri: skos:prefLabel
alias: alias
owner: slot_definition
domain_of:
- slot_definition
range: string
owner:
name: owner
description: the "owner" of the slot. It is the class if it appears in the slots
list, otherwise the declaring slot
deprecated: Will be replaced by domain_of and eventually removed
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
readonly: filled in by loader -- either class domain or slot domain
alias: owner
owner: slot_definition
domain_of:
- slot_definition
range: definition
domain_of:
name: domain_of
description: the class(es) that reference the slot in a "slots" or "slot_usage"
context
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
multivalued: true
readonly: filled in by the loader
alias: domain_of
owner: slot_definition
domain_of:
- slot_definition
range: class_definition
subproperty_of:
name: subproperty_of
description: 'Ontology property which this slot is a subproperty of. Note: setting
this property on a slot does not guarantee an expansion of the ontological hiearchy
into an enumerated list of possible values in every serialization of the model.'
examples:
- value: RO:HOM0000001
description: this is the RO term for "in homology relationship with", and used
as a value of subproperty of this means that any ontological child (related
to RO:HOM0000001 via an is_a relationship), is a valid value for the slot
that declares this with the subproperty_of tag. This differs from the 'values_from'
meta model component in that 'values_from' requires the id of a value set
(said another way, if an entire ontology had a curie/identifier that was the
identifier for the entire ontology, then that identifier would be used in
'values_from.')
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
slot_uri: rdfs:subPropertyOf
alias: subproperty_of
owner: slot_definition
domain_of:
- slot_definition
range: slot_definition
symmetric:
name: symmetric
description: If s is symmetric, and i.s=v, then v.s=i
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:SymmetricProperty
is_a: relational_logical_characteristic
domain: slot_definition
alias: symmetric
owner: slot_definition
domain_of:
- slot_definition
range: boolean
reflexive:
name: reflexive
description: If s is reflexive, then i.s=i for all instances i
comments:
- it is rare for a property to be reflexive, this characteristic is added for
completeness, consider instead locally_reflexive
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:ReflexiveProperty
is_a: relational_logical_characteristic
domain: slot_definition
alias: reflexive
owner: slot_definition
domain_of:
- slot_definition
range: boolean
locally_reflexive:
name: locally_reflexive
description: If s is locally_reflexive, then i.s=i for all instances i where s
if a class slot for the type of i
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: relational_logical_characteristic
domain: slot_definition
alias: locally_reflexive
owner: slot_definition
domain_of:
- slot_definition
range: boolean
irreflexive:
name: irreflexive
description: If s is irreflexive, then there exists no i such i.s=i
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:IrreflexiveProperty
is_a: relational_logical_characteristic
domain: slot_definition
alias: irreflexive
owner: slot_definition
domain_of:
- slot_definition
range: boolean
asymmetric:
name: asymmetric
description: If s is antisymmetric, and i.s=v where i is different from v, v.s
cannot have value i
comments:
- asymmetry is the combination of antisymmetry and irreflexivity
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:AsymmetricProperty
is_a: relational_logical_characteristic
domain: slot_definition
alias: asymmetric
owner: slot_definition
domain_of:
- slot_definition
range: boolean
transitive:
name: transitive
description: If s is transitive, and i.s=z, and s.s=j, then i.s=j
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:TransitiveProperty
is_a: relational_logical_characteristic
domain: slot_definition
alias: transitive
owner: slot_definition
domain_of:
- slot_definition
range: boolean
inverse:
name: inverse
description: indicates that any instance of d s r implies that there is also an
instance of r s' d
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
slot_uri: owl:inverseOf
alias: inverse
owner: slot_definition
domain_of:
- slot_definition
range: slot_definition
is_class_field:
name: is_class_field
description: indicates that for any instance, i, the domain of this slot will
include an assertion of i s range
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
alias: is_class_field
owner: slot_definition
domain_of:
- slot_definition
range: boolean
transitive_form_of:
name: transitive_form_of
description: If s transitive_form_of d, then (1) s holds whenever d holds (2)
s is transitive (3) d holds whenever s holds and there are no intermediates,
and s is not reflexive
comments:
- '{''Example'': ''ancestor_of is the transitive_form_of parent_of''}'
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
alias: transitive_form_of
owner: slot_definition
domain_of:
- slot_definition
range: slot_definition
reflexive_transitive_form_of:
name: reflexive_transitive_form_of
description: transitive_form_of including the reflexive case
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: transitive_form_of
alias: reflexive_transitive_form_of
owner: slot_definition
domain_of:
- slot_definition
range: slot_definition
role:
name: role
description: a textual descriptor that indicates the role played by the slot range
comments:
- the primary use case for this slot is to provide a textual descriptor of a generic
slot name when used in the context of a more specific class
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
inherited: true
alias: role
owner: slot_definition
domain_of:
- slot_definition
range: string
is_usage_slot:
name: is_usage_slot
description: True means that this slot was defined in a slot_usage situation
deprecated: Replaced by usage_slot_name
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
readonly: filled in by the loader
alias: is_usage_slot
owner: slot_definition
domain_of:
- slot_definition
range: boolean
usage_slot_name:
name: usage_slot_name
description: The name of the slot referenced in the slot_usage
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
readonly: filled in by the loader
alias: usage_slot_name
owner: slot_definition
domain_of:
- slot_definition
range: string
relational_role:
name: relational_role
description: the role a slot on a relationship class plays, for example, the subject,
object or predicate roles
comments:
- this should only be used on slots that are applicable to class that represent
relationships
- in the context of RDF, this should be used for slots that can be modeled using
the RDF reification vocabulary
- in the context of property graphs, this should be used on edge classes to indicate
which slots represent the input and output nodes
from_schema: https://w3id.org/linkml/meta
aliases:
- reification_role
status: testing
domain: slot_definition
inherited: true
alias: relational_role
owner: slot_definition
domain_of:
- slot_definition
range: relational_role_enum
slot_group:
name: slot_group
description: allows for grouping of related slots into a grouping slot that serves
the role of a group
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
slot_uri: sh:group
alias: slot_group
owner: slot_definition
domain_of:
- slot_definition
range: slot_definition
range_expression:
slot_conditions:
is_grouping_slot:
name: is_grouping_slot
equals_expression: 'True'
is_grouping_slot:
name: is_grouping_slot
description: true if this slot is a grouping slot
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- sh:PropertyGroup
domain: slot_definition
alias: is_grouping_slot
owner: slot_definition
domain_of:
- slot_definition
range: boolean
path_rule:
name: path_rule
description: a rule for inferring a slot assignment based on evaluating a path
through a sequence of slot assignemnts
from_schema: https://w3id.org/linkml/meta
domain: slot_definition
alias: path_rule
owner: slot_definition
domain_of:
- slot_definition
range: path_expression
disjoint_with:
name: disjoint_with
description: Two classes are disjoint if they have no instances in common, two
slots are disjoint if they can never hold between the same two instances
from_schema: https://w3id.org/linkml/meta
domain: definition
multivalued: true
alias: disjoint_with
owner: slot_definition
domain_of:
- slot_definition
- class_definition
range: slot_definition
children_are_mutually_disjoint:
name: children_are_mutually_disjoint
description: If true then all direct is_a children are mutually disjoint and share
no instances in common
from_schema: https://w3id.org/linkml/meta
domain: definition
alias: children_are_mutually_disjoint
owner: slot_definition
domain_of:
- slot_definition
- class_definition
range: boolean
union_of:
name: union_of
description: indicates that the domain element consists exactly of the members
of the element in the range.
from_schema: https://w3id.org/linkml/meta
domain: element
multivalued: true
alias: union_of
owner: slot_definition
domain_of:
- type_definition
- slot_definition
- class_definition
range: type_definition
range:
name: range
description: "defines the type of the object of the slot. Given the following\
\ slot definition\n S1:\n domain: C1\n range: C2\nthe declaration\n\
\ X:\n S1: Y\n\nimplicitly asserts Y is an instance of C2\n"
comments:
- range is underspecified, as not all elements can appear as the range of a slot.
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
from_schema: https://w3id.org/linkml/meta
aliases:
- value domain
domain: slot_definition
inherited: true
ifabsent: default_range
alias: range
owner: slot_definition
domain_of:
- slot_expression
range: element
range_expression:
name: range_expression
description: A range that is described as a boolean expression combining existing
ranges
comments:
- one use for this is being able to describe a range using any_of expressions,
for example to combine two enums
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_expression
alias: range_expression
owner: slot_definition
domain_of:
- path_expression
- slot_expression
range: anonymous_class_expression
enum_range:
name: enum_range
description: An inlined enumeration
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
alias: enum_range
owner: slot_definition
domain_of:
- slot_expression
range: enum_expression
required:
name: required
description: true means that the slot must be present in the loaded definition
in_subset:
- SpecificationSubset
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
from_schema: https://w3id.org/linkml/meta
rank: 8
domain: slot_definition
inherited: true
alias: required
owner: slot_definition
domain_of:
- slot_expression
range: boolean
recommended:
name: recommended
description: true means that the slot should be present in the loaded definition,
but this is not required
comments:
- This is to be used where not all data is expected to conform to having a required
field
- If a slot is recommended, and it is not populated, applications must not treat
this as an error. Applications may use this to inform the user of missing data
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://github.com/linkml/linkml/issues/177
rank: 9
domain: slot_definition
inherited: true
alias: recommended
owner: slot_definition
domain_of:
- slot_expression
range: boolean
inlined:
name: inlined
description: True means that keyed or identified slot appears in an outer structure
by value. False means that only the key or identifier for the slot appears
within the domain, referencing a structure that appears elsewhere.
comments:
- classes without keys or identifiers are necessarily inlined as lists
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 25
domain: slot_definition
inherited: true
alias: inlined
owner: slot_definition
domain_of:
- slot_expression
range: boolean
inlined_as_list:
name: inlined_as_list
description: True means that an inlined slot is represented as a list of range
instances. False means that an inlined slot is represented as a dictionary,
whose key is the slot key or identifier and whose value is the range instance.
comments:
- 'The default loader will accept either list or dictionary form as input. This
parameter controls internal
representation and output.'
- 'A keyed or identified class with one additional slot can be input in a third
form, a dictionary whose key
is the key or identifier and whose value is the one additional element. This
form is still stored according
to the inlined_as_list setting.'
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 27
domain: slot_definition
inherited: true
alias: inlined_as_list
owner: slot_definition
domain_of:
- slot_expression
range: boolean
minimum_value:
name: minimum_value
description: for slots with ranges of type number, the value must be equal to
or higher than this
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- low value
domain: slot_definition
inherited: true
alias: minimum_value
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: integer
maximum_value:
name: maximum_value
description: for slots with ranges of type number, the value must be equal to
or lowe than this
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- high value
domain: slot_definition
inherited: true
alias: maximum_value
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: integer
pattern:
name: pattern
description: the string value of the slot must conform to this regular expression
expressed in the string
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
rank: 35
domain: definition
inherited: true
alias: pattern
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: string
structured_pattern:
name: structured_pattern
description: the string value of the slot must conform to the regular expression
in the pattern expression
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: definition
inherited: true
alias: structured_pattern
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: pattern_expression
unit:
name: unit
description: an encoding of a unit
from_schema: https://w3id.org/linkml/units
slot_uri: qudt:unit
alias: unit
owner: slot_definition
domain_of:
- type_expression
- slot_expression
- permissible_value
range: UnitOfMeasure
implicit_prefix:
name: implicit_prefix
description: Causes the slot value to be interpreted as a uriorcurie after prefixing
with this string
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: slot_expression
alias: implicit_prefix
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: string
equals_string:
name: equals_string
description: the slot must have range string and the value of the slot must equal
the specified value
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
inherited: true
alias: equals_string
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: string
equals_string_in:
name: equals_string_in
description: the slot must have range string and the value of the slot must equal
one of the specified values
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
status: testing
multivalued: true
inherited: true
alias: equals_string_in
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: string
equals_number:
name: equals_number
description: the slot must have range of a number and the value of the slot must
equal the specified value
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
status: unstable
inherited: true
alias: equals_number
owner: slot_definition
domain_of:
- type_expression
- slot_expression
range: integer
equals_expression:
name: equals_expression
description: the value of the slot must equal the value of the evaluated expression
todos:
- specify expression language
comments:
- for example, a 'length' slot may have an equals_expression with value '(end-start)+1'
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://github.com/linkml/linkml/issues/75
is_a: list_value_specification_constant
inherited: true
alias: equals_expression
owner: slot_definition
domain_of:
- slot_expression
range: string
minimum_cardinality:
name: minimum_cardinality
description: the minimum number of entries for a multivalued slot
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
status: testing
inherited: true
alias: minimum_cardinality
owner: slot_definition
domain_of:
- slot_expression
range: integer
maximum_cardinality:
name: maximum_cardinality
description: the maximum number of entries for a multivalued slot
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
status: testing
inherited: true
alias: maximum_cardinality
owner: slot_definition
domain_of:
- slot_expression
range: integer
has_member:
name: has_member
description: the values of the slot is multivalued with at least one member satisfying
the condition
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
status: testing
alias: has_member
owner: slot_definition
domain_of:
- slot_expression
range: anonymous_slot_expression
inlined: true
all_members:
name: all_members
description: "the value of the multiavlued slot is a list where all elements conform\
\ to the specified values.\nthis defines a dynamic class with named slots according\
\ to matching constraints\n\nE.g to state that all members of a list are between\
\ 1 and 10\n```\nall_members:\n x:\n range: integer\n minimum_value:\
\ 10\n maximum_value: 10\n```"
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
is_a: list_value_specification_constant
status: testing
multivalued: true
alias: all_members
owner: slot_definition
domain_of:
- slot_expression
range: slot_definition
inlined: true
none_of:
name: none_of
description: holds if none of the expressions hold
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- sh:not
rank: 105
is_a: boolean_slot
multivalued: true
alias: none_of
owner: slot_definition
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: anonymous_slot_expression
exactly_one_of:
name: exactly_one_of
description: holds if only one of the expressions hold
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- sh:xone
rank: 103
is_a: boolean_slot
multivalued: true
alias: exactly_one_of
owner: slot_definition
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: anonymous_slot_expression
any_of:
name: any_of
description: holds if at least one of the expressions hold
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- sh:or
rank: 101
is_a: boolean_slot
multivalued: true
alias: any_of
owner: slot_definition
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: anonymous_slot_expression
all_of:
name: all_of
description: holds if all of the expressions hold
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- sh:and
rank: 107
is_a: boolean_slot
multivalued: true
alias: all_of
owner: slot_definition
domain_of:
- type_expression
- path_expression
- slot_expression
- class_expression
range: anonymous_slot_expression
is_a:
name: is_a
description: A primary parent slot from which inheritable metaslots are propagated
from_schema: https://w3id.org/linkml/meta
rank: 11
abstract: true
domain: definition
alias: is_a
owner: slot_definition
domain_of:
- definition
- anonymous_class_expression
range: slot_definition
abstract:
name: abstract
description: Indicates the class or slot cannot be directly instantiated and is
intended for grouping and specifying core inherited metaslots
in_subset:
- SpecificationSubset
- BasicSubset
- ObjectOrientedProfile
from_schema: https://w3id.org/linkml/meta
domain: definition
alias: abstract
owner: slot_definition
domain_of:
- definition
range: boolean
mixin:
name: mixin
description: Indicates the class or slot is not intended to inherited from without
being an is_a parent. mixins should not be inherited from using is_a, except
by other mixins.
in_subset:
- SpecificationSubset
- BasicSubset
- ObjectOrientedProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Mixin
aliases:
- trait
domain: definition
alias: mixin
owner: slot_definition
domain_of:
- definition
range: boolean
mixins:
name: mixins
description: A collection of secondary parent mixin slots from which inheritable
metaslots are propagated
from_schema: https://w3id.org/linkml/meta
rank: 13
domain: definition
multivalued: true
alias: mixins
owner: slot_definition
domain_of:
- definition
range: slot_definition
apply_to:
name: apply_to
description: Used to extend class or slot definitions. For example, if we have
a core schema where a gene has two slots for identifier and symbol, and we have
a specialized schema for my_organism where we wish to add a slot systematic_name,
we can avoid subclassing by defining a class gene_my_organism, adding the slot
to this class, and then adding an apply_to pointing to the gene class. The new
slot will be 'injected into' the gene class.
from_schema: https://w3id.org/linkml/meta
domain: definition
multivalued: true
alias: apply_to
owner: slot_definition
domain_of:
- definition
range: slot_definition
values_from:
name: values_from
description: 'The identifier of a "value set" -- a set of identifiers that form
the possible values for the range of a slot. Note: this is different than ''subproperty_of''
in that ''subproperty_of'' is intended to be a single ontology term while ''values_from''
is the identifier of an entire value set. Additionally, this is different than
an enumeration in that in an enumeration, the values of the enumeration are
listed directly in the model itself. Setting this property on a slot does not
guarantee an expansion of the ontological hiearchy into an enumerated list of
possible values in every serialization of the model.'
from_schema: https://w3id.org/linkml/meta
domain: definition
multivalued: true
alias: values_from
owner: slot_definition
domain_of:
- definition
range: uriorcurie
created_by:
name: created_by
description: agent that created the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: pav:createdBy
alias: created_by
owner: slot_definition
domain_of:
- definition
range: uriorcurie
created_on:
name: created_on
description: time at which the element was created
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: pav:createdOn
alias: created_on
owner: slot_definition
domain_of:
- definition
range: datetime
last_updated_on:
name: last_updated_on
description: time at which the element was last updated
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: pav:lastUpdatedOn
alias: last_updated_on
owner: slot_definition
domain_of:
- definition
range: datetime
modified_by:
name: modified_by
description: agent that modified the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: oslc:modifiedBy
alias: modified_by
owner: slot_definition
domain_of:
- definition
range: uriorcurie
status:
name: status
description: status of the element
examples:
- value: bibo:draft
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://www.hl7.org/fhir/valueset-publication-status.html
- https://www.hl7.org/fhir/versions.html#std-process
aliases:
- workflow status
domain: element
slot_uri: bibo:status
alias: status
owner: slot_definition
domain_of:
- definition
range: uriorcurie
string_serialization:
name: string_serialization
description: 'Used on a slot that stores the string serialization of the containing
object. The syntax follows python formatted strings, with slot names enclosed
in {}s. These are expanded using the values of those slots.
We call the slot with the serialization the s-slot, the slots used in the {}s
are v-slots. If both s-slots and v-slots are populated on an object then the
value of the s-slot should correspond to the expansion.
Implementations of frameworks may choose to use this property to either (a)
PARSE: implement automated normalizations by parsing denormalized strings into
complex objects (b) GENERARE: implement automated to_string labeling of complex
objects
For example, a Measurement class may have 3 fields: unit, value, and string_value.
The string_value slot may have a string_serialization of {value}{unit} such
that if unit=cm and value=2, the value of string_value shouldd be 2cm'
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://github.com/linkml/issues/128
domain: definition
inherited: false
alias: string_serialization
owner: slot_definition
domain_of:
- definition
range: string
name:
name: name
description: the unique name of the element within the context of the schema. Name
is combined with the default prefix to form the globally unique subject of the
target class.
in_subset:
- SpecificationSubset
- OwlProfile
- MinimalSubset
- BasicSubset
- RelationalModelProfile
- ObjectOrientedProfile
from_schema: https://w3id.org/linkml/meta
see_also:
- https://en.wikipedia.org/wiki/Data_element_name
aliases:
- short name
- unique name
exact_mappings:
- schema:name
rank: 1
domain: element
slot_uri: rdfs:label
identifier: true
alias: name
owner: slot_definition
domain_of:
- element
range: string
id_prefixes:
name: id_prefixes
description: the identifier of this class or slot must begin with the URIs referenced
by this prefix
comments:
- Order of elements may be used to indicate priority order
- If identifiers are treated as CURIEs, then the CURIE must start with one of
the indicated prefixes followed by `:` (_should_ start if the list is open)
- If identifiers are treated as URIs, then the URI string must start with the
expanded for of the prefix (_should_ start if the list is open)
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
see_also:
- https://github.com/linkml/linkml/issues/194
- https://github.com/linkml/linkml-model/issues/28
domain: element
multivalued: true
alias: id_prefixes
owner: slot_definition
domain_of:
- element
range: ncname
definition_uri:
name: definition_uri
description: the "native" URI of the element
comments:
- Formed by combining the default_prefix with the mangled element
from_schema: https://w3id.org/linkml/meta
domain: element
readonly: filled in by the schema loader
alias: definition_uri
owner: slot_definition
domain_of:
- element
range: uriorcurie
local_names:
name: local_names
from_schema: https://w3id.org/linkml/meta
domain: element
multivalued: true
alias: local_names
owner: slot_definition
domain_of:
- element
range: local_name
inlined: true
conforms_to:
name: conforms_to
description: An established standard to which the element conforms.
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: dcterms:conformsTo
alias: conforms_to
owner: slot_definition
domain_of:
- element
range: string
extensions:
name: extensions
description: a tag/text tuple attached to an arbitrary element
from_schema: https://w3id.org/linkml/extensions
domain: extensible
multivalued: true
alias: extensions
owner: slot_definition
domain_of:
- extension
- extensible
range: extension
inlined: true
annotations:
name: annotations
description: a collection of tag/text tuples with the semantics of OWL Annotation
from_schema: https://w3id.org/linkml/annotations
is_a: extensions
domain: annotatable
multivalued: true
alias: annotations
owner: slot_definition
domain_of:
- annotatable
- annotation
range: annotation
inlined: true
description:
name: description
description: a description of the element's purpose and use
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- definition
exact_mappings:
- dcterms:description
- schema:description
rank: 5
domain: element
slot_uri: skos:definition
alias: description
owner: slot_definition
domain_of:
- common_metadata
- permissible_value
range: string
recommended: true
alt_descriptions:
name: alt_descriptions
description: A sourced alternative description for an element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- alternate definitions
domain: element
multivalued: true
alias: alt_descriptions
owner: slot_definition
domain_of:
- common_metadata
range: alt_description
inlined: true
title:
name: title
description: the official title of the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- long name
rank: 3
domain: element
slot_uri: dcterms:title
alias: title
owner: slot_definition
domain_of:
- common_metadata
range: string
deprecated:
name: deprecated
description: Description of why and when this element will no longer be used
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- owl:deprecated
domain: element
alias: deprecated
owner: slot_definition
domain_of:
- common_metadata
range: string
todos:
name: todos
description: Outstanding issue that needs resolution
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
multivalued: true
alias: todos
owner: slot_definition
domain_of:
- common_metadata
range: string
notes:
name: notes
description: editorial notes about an element intended for internal consumption
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: skos:editorialNote
multivalued: true
alias: notes
owner: slot_definition
domain_of:
- common_metadata
range: string
comments:
name: comments
description: notes and comments about an element intended for external consumption
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
exact_mappings:
- rdfs:comment
domain: element
slot_uri: skos:note
multivalued: true
alias: comments
owner: slot_definition
domain_of:
- common_metadata
range: string
examples:
name: examples
description: example usages of an element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
close_mappings:
- vann:example
singular_name: example
domain: element
multivalued: true
alias: examples
owner: slot_definition
domain_of:
- common_metadata
range: example
inlined: true
in_subset:
name: in_subset
description: used to indicate membership of a term in a defined subset of terms
used for a particular domain or application (e.g. the translator_minimal subset
holding the minimal set of predicates used in a translator knowledge graph)
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: OIO:inSubset
multivalued: true
alias: in_subset
owner: slot_definition
domain_of:
- common_metadata
range: subset_definition
from_schema:
name: from_schema
description: id of the schema that defined the element
notes:
- A stronger model would be range schema_definition, but this doesn't address
the import model
in_subset:
- SpecificationSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: skos:inScheme
readonly: supplied by the schema loader
alias: from_schema
owner: slot_definition
domain_of:
- common_metadata
range: uri
imported_from:
name: imported_from
description: the imports entry that this element was derived from. Empty means
primary source
from_schema: https://w3id.org/linkml/meta
domain: element
readonly: supplied by the schema loader
alias: imported_from
owner: slot_definition
domain_of:
- common_metadata
range: string
source:
name: source
description: A related resource from which the element is derived.
comments:
- The described resource may be derived from the related resource in whole or
in part
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- origin
- derived from
close_mappings:
- prov:wasDerivedFrom
- schema:isBasedOn
domain: element
slot_uri: dcterms:source
alias: source
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
in_language:
name: in_language
notes:
- Use a string from IETF BCP 47
from_schema: https://w3id.org/linkml/meta
slot_uri: schema:inLanguage
alias: in_language
owner: slot_definition
domain_of:
- common_metadata
range: string
see_also:
name: see_also
description: a reference
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
domain: element
slot_uri: rdfs:seeAlso
multivalued: true
alias: see_also
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
deprecated element has exact replacement:
name: deprecated element has exact replacement
description: When an element is deprecated, it can be automatically replaced by
this uri or curie
from_schema: https://w3id.org/linkml/mappings
mappings:
- IAO:0100001
alias: deprecated_element_has_exact_replacement
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
deprecated element has possible replacement:
name: deprecated element has possible replacement
description: When an element is deprecated, it can be potentially replaced by
this uri or curie
from_schema: https://w3id.org/linkml/mappings
mappings:
- OIO:consider
alias: deprecated_element_has_possible_replacement
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
aliases:
name: aliases
description: Alaternate names for the element
in_subset:
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- synonyms
- alternate names
- alternative labels
- designations
exact_mappings:
- schema:alternateName
domain: element
slot_uri: skos:altLabel
multivalued: true
alias: aliases
owner: slot_definition
domain_of:
- common_metadata
range: string
structured_aliases:
name: structured_aliases
description: A list of structured_alias objects.
from_schema: https://w3id.org/linkml/meta
slot_uri: skosxl:altLabel
multivalued: true
alias: structured_aliases
owner: slot_definition
domain_of:
- common_metadata
range: structured_alias
inlined: true
mappings:
name: mappings
description: A list of terms from different schemas or terminology systems that
have comparable meaning. These may include terms that are precisely equivalent,
broader or narrower in meaning, or otherwise semantically related but not equivalent
from a strict ontological perspective.
from_schema: https://w3id.org/linkml/mappings
aliases:
- xrefs
- identifiers
- alternate identifiers
- alternate ids
slot_uri: skos:mappingRelation
multivalued: true
alias: mappings
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
exact mappings:
name: exact mappings
description: A list of terms from different schemas or terminology systems that
have identical meaning.
from_schema: https://w3id.org/linkml/mappings
is_a: mappings
slot_uri: skos:exactMatch
multivalued: true
inherited: false
alias: exact_mappings
owner: slot_definition
domain_of:
- common_metadata
- UnitOfMeasure
range: uriorcurie
close mappings:
name: close mappings
description: A list of terms from different schemas or terminology systems that
have close meaning.
from_schema: https://w3id.org/linkml/mappings
is_a: mappings
slot_uri: skos:closeMatch
multivalued: true
inherited: false
alias: close_mappings
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
related mappings:
name: related mappings
description: A list of terms from different schemas or terminology systems that
have related meaning.
from_schema: https://w3id.org/linkml/mappings
is_a: mappings
slot_uri: skos:relatedMatch
multivalued: true
inherited: false
alias: related_mappings
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
narrow mappings:
name: narrow mappings
description: A list of terms from different schemas or terminology systems that
have narrower meaning.
from_schema: https://w3id.org/linkml/mappings
is_a: mappings
slot_uri: skos:narrowMatch
multivalued: true
inherited: false
alias: narrow_mappings
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
broad mappings:
name: broad mappings
description: A list of terms from different schemas or terminology systems that
have broader meaning.
from_schema: https://w3id.org/linkml/mappings
is_a: mappings
slot_uri: skos:broadMatch
multivalued: true
inherited: false
alias: broad_mappings
owner: slot_definition
domain_of:
- common_metadata
range: uriorcurie
rank:
name: rank
description: the relative order in which the element occurs, lower values are
given precedence
comments:
- the rank of an element does not affect the semantics
in_subset:
- SpecificationSubset
- BasicSubset
from_schema: https://w3id.org/linkml/meta
aliases:
- order
- precedence
- display order
exact_mappings:
- qudt:order
rank: 51
slot_uri: sh:order
alias: rank
owner: slot_definition
domain_of:
- common_metadata
- class_rule
range: integer
Each row of a DH interface represents an instance of a class from some schema. Each column represents a slot from that class.
When checking a value in a DH interface cell, which slot_definition attributes can we or should we validate?