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microbiomedata / dh_testing

Sandbox for testing the content of various minimal schemas vs DataHarmonizer
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Add simple DH interface using published components #4

Closed pkalita-lbl closed 2 years ago

pkalita-lbl commented 2 years ago

These changes add a barebones DataHarmonizer interface in a new web directory. It is built using the NPM-published components, so relying on a git submodule is no longer required. And since it isn't directly tied to the main DataHarmonizer repository you're free to customize this interface or modify it however you see fit.

To run the interface:

cd web
yarn  # required once for initial installation of dependencies
yarn dev
turbomam commented 2 years ago

Any chance you could hang out on Zoom while I try it now?

turbomam commented 2 years ago

can you remind me what we ahd to do to get yarn installed and working on my computer>

turbomam commented 2 years ago

Assumes that JSON version of schema has been generated in the right place

pkalita-lbl commented 2 years ago

can you remind me what we ahd to do to get yarn installed and working on my computer

Typically if you have Node >= 16 installed, you can enable yarn by running corepack enable. I think we ran into some confusion because you didn't have corepack on your system even though you had a recent version of Node. We solved it by installing corepack with npm install -g corepack and then running corepack enable.

You can think of yarn as being analogous to poetry in the Python world. You don't have to setup yarn itself for every project; that's a system-wide thing. Within a project yarn is like poetry install, yarn <cmd> is like poetry run <cmd>.

Assumes that JSON version of schema has been generated in the right place

Yes, the web directory is set up to read schema JSON files out of the web/schemas directory. I checked in the JSON version of dh_testing in that directory and there is a Makefile target to update it.