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microbiomedata / docs

User-facing, web-based documentation about the NMDC
https://docs.microbiomedata.org
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meta pro - Sam/Cam/Camillo #15

Open ssarrafan opened 4 weeks ago

ssarrafan commented 4 weeks ago

Follow the template below for the index.rst file that is in the docs folder of the repo for your workflow: Title of Workflow (Image) Workflow overview Workflow availability Requirements for Execution Hardware requirements Workflow dependencies Software Database(s) Sample dataset(s) Input Output Version history Point of contact

If you have updated figures please put the editable components of the figures here as well as in the documentation Please follow the following format for updating your documentation:

SamuelPurvine commented 3 weeks ago

So that folder is https://github.com/microbiomedata/metaPro/blob/master/docs/, and the index.rst definitely does not yet reflect this format.

Last I saw @picowatt was working on getting the index file into the right format.

@GrantFujimoto was editing the diagram that can be found at https://github.com/microbiomedata/workflow_documentation/blob/master/docs/chapters/7_Metaproteomics_index.rst to be closer to what the actual outputs are, and was ready to pass that along to @pdpiehowski for approval. Additionally Grant updated the diagram that includes the Kaiko model so when that gets released we'll have that ready to go when the time comes. I would think Grant can then put that powerpoint over into the location you specify above.

picowatt commented 3 weeks ago

Mostly done. Only the Input and Output portions left to finish.

ssarrafan commented 1 week ago

@picowatt what's the status of this? Can you complete this by Friday?

picowatt commented 1 week ago

@ssarrafan I have time this afternoon to revisit this, will be done before the end of the day.

kaijli commented 3 days ago

@picowatt I uploaded the workflow figures that we chatted about last time https://github.com/microbiomedata/metaPro/pull/75