Open aclum opened 1 year ago
Two results were ingested but this was only annotation and reads based analysis. IMG needs to test ingesting binning results and IMG needs to ingest the remainder of the records. Reddy did test generating new biosamples for projects that weren't in GOLD.
I gave Amy the mapping for the rest of the soil samples, the GOLD team is working on curating the biosamples that didn't exist in GOLD previously. Moving to the next sprint since this won't be finished by Friday.
Removing this from the sprint and adding the backlog label. Not updates in 2 weeks on the ticket.
Marcel imported ~50 projects, about 10% had errors b/c of nmdc run failures. @Michal-Babins is looking into the failures.
@Michal-Babins @aclum is this still in progress?
Michal restarted the failures and some of them are still running. Additionally, Reddy & the GOLD team finished curating the rest of the biosamples so there are another ~1000 annotations that IMG can now import. Leaving in the backlog for now since most of the work is on the jgi side.
Marcel has been ingesting more data this week.
Patrick ran into issues on the projects we re-annotated started from JGI assemblies. There are a few tickets that I'll link that need to be resolved. blocked on https://github.com/microbiomedata/nmdc_automation/issues/35 and https://github.com/microbiomedata/mg_annotation/issues/24
This has been blocked on a variety of issues with the binning, schema, and the automation code. We expect to have some binning results this quarter which could be passed off to JGI.
NMDC roadmap this task is associated with 1.5 Establish data sharing process with IMG/M to support NMDC workfow outputs and associated links
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