search

microbiomedata / issues

public repo for issues related to NMDC work
1 stars 0 forks source link

Milestone - Sample Jupyter and RStudio notebooks available that highlight NMDC data and metadata (2.26) #512

Open ssarrafan opened 11 months ago

ssarrafan commented 11 months ago

The NMDC will add capabilities to enable advanced custom data exploration in an interactive form. Our intent is not to develop a new platform, instead we will focus on deepening relationships with key stakeholders by connecting NMDC data with notebooks launched on existing Jupyter / RStudio services offered by DOE or cloud providers (e.g., NERSC JupyterHub, Google Colab, Binder). The goal of these notebooks is to provide users with the ability to combine interactive live code execution with inline documentation and visualizations (Milestone 2.26). These notebooks can be automatically generated from data and analyses of interest, and spun up in real-time on users’ personal computers or existing computing infrastructure. There is a compelling training and education component to this approach, since live notebooks are ideally suited to providing hands-on examples showing users how to interact with and analyze NMDC data. This approach will also serve as a model for how users can access data and run NMDC workflows in KBase (see Integration with DOE KBase).

Page 38

kheal commented 1 month ago

FYI, this work is being tracked by the notebook squad here: https://github.com/orgs/microbiomedata/projects/131 .

ssarrafan commented 1 month ago

@kheal @cmungall @shreddd what's the possibility of this being completed by September? This milestone is due in September, this quarter.

kheal commented 1 month ago

We're in good shape for two new notebooks by the end of September to explore NOM data. We've already added one new one here: https://github.com/microbiomedata/nmdc_notebooks/pull/42 .