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run NEON benthic samples through NMDC workflows #530

Closed aclum closed 7 months ago

aclum commented 10 months ago

Deliverable this task is associated with

_See Deliverables tab here: https://docs.google.com/spreadsheets/d/1jF1RU_TwQlJpqvHnKk-KieE6VlUv0je4eFddK9idPuE/edit#gid=417989680

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Tag Blocker/Contingent upon issues https://github.com/microbiomedata/issues/issues/335 - biosample_set through omics_procesing_set ingest should happen shortly.

ssarrafan commented 9 months ago

@aclum is this active?

aclum commented 9 months ago

Yes, these have been running and should be largely complete. @Michal-Babins should be able to summarize the status when he is back next week. Moving to the next sprint.

aclum commented 9 months ago

Michal updated via slack last week. 400 Benthic samples done (~70%), had to reset the rest due to connection error and perlmutter outages.

Michal-Babins commented 9 months ago

Submitted all benthic samples, and resubmitted after outage. Will scrape any errors and report them for review.

ssarrafan commented 9 months ago

Appears to be active. Moving to next sprint.

aclum commented 9 months ago

still active but won't be done this sprint. Moving to January sprint.

aclum commented 7 months ago

Moving this to the next sprint b/c this won't be worked on until we can add qc info to the workflow records which won't be available until the 1/29/24 runtime update.

ssarrafan commented 7 months ago

@aclum should this one go in the backlog? doesn't appear to be active.

Michal-Babins commented 7 months ago

This one is done!

ssarrafan commented 7 months ago

Closing per last comment from @Michal-Babins