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Confirm Marcel's NEON ingest failures #548

Open aclum opened 6 months ago

aclum commented 6 months ago

nmdc:omprc-11-ycnhgw23 failed since /global/cfs/cdirs/m3408/results/nmdc:omprc-11-ycnhgw23/ does not exist nmdc:omprc-11-hcjd7y28 Ga0613956 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-hcjd7y28/! nmdc:omprc-11-nym9hw15 Ga0613991 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-nym9hw15/! nmdc:omprc-11-e41g0r22 Ga0613992 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-e41g0r22/! nmdc:omprc-11-sff9fv40 Ga0614073 /global/cfs/cdirs/m3408/results/nmdc:omprc-11-sff9fv40/ is not a directory! nmdc:omprc-11-ygpgrx75 Ga0614102 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-ygpgrx75/! nmdc:omprc-11-6z6kan67 Ga0614105 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-6z6kan67/! nmdc:omprc-11-9k6phs04 Ga0614106 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-9k6phs04/! nmdc:omprc-11-z1258154 Ga0614108 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-z1258154/! nmdc:omprc-11-3ccpc003 Ga0614120 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-3ccpc003/! nmdc:omprc-11-p8dwzv82 Ga0614142 /global/cfs/cdirs/m3408/results/nmdc:omprc-11-p8dwzv82/ is not a directory! nmdc:omprc-11-5db5cn15 Ga0614169 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-5db5cn15/! nmdc:omprc-11-w5b60h38 Ga0614171 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-w5b60h38/! nmdc:omprc-11-8nq16k21 Ga0614182 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-8nq16k21/! nmdc:omprc-11-ka64by17 Ga0614183 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-ka64by17/! nmdc:omprc-11-xs0rw715 Ga0614184 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-xs0rw715/! nmdc:omprc-11-10tbf517 Ga0614283 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-10tbf517/! nmdc:omprc-11-catf3k74 Ga0614285 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-catf3k74/! nmdc:omprc-11-ah0vp835 Ga0614286 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-ah0vp835/! nmdc:omprc-11-4tsx7193 Ga0614287 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-4tsx7193/! nmdc:omprc-11-pfghv813 Ga0614288 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-pfghv813/! nmdc:omprc-11-b15k3736 Ga0614289 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-b15k3736/! nmdc:omprc-11-f72cmy96 Ga0614290 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-f72cmy96/! nmdc:omprc-11-x0ygmy06 Ga0614291 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-x0ygmy06/! nmdc:omprc-11-g6mpn339 Ga0614292 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-g6mpn339/! nmdc:omprc-11-4n1cd874 Ga0614293 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-4n1cd874/! nmdc:omprc-11-fe0aen13 Ga0614294 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-fe0aen13/! nmdc:omprc-11-szhw9446 Ga0614295 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-szhw9446/! nmdc:omprc-11-2wj7dv55 Ga0614296 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-2wj7dv55/! nmdc:omprc-11-k8qges15 Ga0614297 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-k8qges15/! nmdc:omprc-11-1r0k6x05 Ga0614298 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-1r0k6x05/! nmdc:omprc-11-pwkpj504 Ga0614368 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-pwkpj504/! nmdc:omprc-11-6tj3x181 Ga0614370 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-6tj3x181/! nmdc:omprc-11-njyafc73 Ga0614373 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-njyafc73/! nmdc:omprc-11-6exkjr62 Ga0614374 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-6exkjr62/! nmdc:omprc-11-xh9det28 Ga0614376 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-xh9det28/! nmdc:omprc-11-4k0y0v77 Ga0614386 /global/cfs/cdirs/m3408/results/nmdc:omprc-11-4k0y0v77/ is not a directory! nmdc:omprc-11-ccqj0v42 Ga0614390 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-ccqj0v42/! nmdc:omprc-11-c88a3a72 Ga0614392 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-c88a3a72/! nmdc:omprc-11-nc1pvh63 Ga0614393 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-nc1pvh63/! nmdc:omprc-11-rejajm76 Ga0614394 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-rejajm76/! nmdc:omprc-11-vf6sjy72 Ga0614395 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-vf6sjy72/! nmdc:omprc-11-vekqrr73 Ga0614398 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-vekqrr73/! nmdc:omprc-11-xeqrmw26 Ga0614412 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-xeqrmw26/! nmdc:omprc-11-evjjad51 Ga0614413 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-evjjad51/! nmdc:omprc-11-ftyh4433 Ga0614417 No assembly dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-ftyh4433/! nmdc:omprc-11-jnmfh629 Ga0614419 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-jnmfh629/! nmdc:omprc-11-6nr75c81 Ga0614422 No annotation dir found in /global/cfs/cdirs/m3408/results/nmdc:omprc-11-6nr75c81/!

aclum commented 6 months ago

note also https://github.com/microbiomedata/issues/issues/547, I did not duplicate that OmicsProcessing ID here.