NEON soil - ingest JGI data for nmdc:omprc-11-ycnhgw23

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NEON soil - ingest JGI data for nmdc:omprc-11-ycnhgw23 #691

Open aclum opened 4 months ago

aclum commented 4 months ago

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RACI

Tag people in their roles

Responsible: @mflynn-lanl
Accountable:
Consulted:
Informed:

Describe the the task

[ ] Ingest JGI readqc and annotation for nmdc:omprc-11-ycnhgw23, all other datasets were ingested in https://github.com/microbiomedata/issues/issues/264

Criteria for completion

records in mongo for read_qc_analysis_activity_set and metagenome_assembly_set that were_informed_by nmdc:omprc-11-ycnhgw23

Estimate people time

[Hours or days of people time. 1 person, 4 hours]

Completion Date (Goal)

[GOAL!]

Target Sprint Start & End Dates

Start:
End:

Tag Blocker/Contingent upon issues

[Tagg issues]

aclum commented 4 months ago

@mflynn-lanl where was the JGI NEON data staged to? GOLD analysis identifier is Ga0597026

mflynn-lanl commented 4 months ago

The data was staged to: /global/cfs/projectdirs/m3408/aim2/dev/bioscales_mapping/neon_analysis_projects/Ga0597026/

From: aclum @.> Sent: Tuesday, May 7, 2024 2:31 PM To: microbiomedata/issues @.> Cc: Flynn, Mark C @.>; Mention @.> Subject: [EXTERNAL] Re: [microbiomedata/issues] NEON soil - ingest JGI data for nmdc:omprc-11-ycnhgw23 (Issue #691)

@mflynn-lanlhttps://urldefense.com/v3/__https://github.com/mflynn-lanl__;!!Bt8fGhp8LhKGRg!GuM9CIubUWp9T1ZHjlpa4muI20pRCuaJnuktX8_o7tiVE85ZWx1e5UEyJDA8U54mN1elW1mFb6wECKq0echlkHVr$ where was the JGI NEON data staged to? GOLD analysis identifier is Ga0597026

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aclum commented 2 weeks ago

This is blocked on https://github.com/microbiomedata/nmdc_automation/issues/239