I'm guessing this is coming from some combination of the depth/depth2 change, NOM metadata generation problems, and/or projects we wanted to ingest even if they had some information missing.
For each project, look up metadata from original sources to make sure all the information ends up in the right fields, then record findings here.
Here's the list, by sample type (as determined from env_medium) and study:
Water: point OR range, required
[ ] nmdc:sty-11-5bgrvr62 has numeric value for 46/471 samples
[ ] nmdc:sty-11-5tgfr349 has numeric value for 14/300 samples
[ ] nmdc:sty-11-8fb6t785 has numeric value for 20/21 samples
[x] nmdc:sty-11-hht5sb92 has min/max for 10/192 samples, numeric for the rest
Soil: range, required
[ ] nmdc:sty-11-34xj1150 missing 30 minimum, 3 maximum
[ ] nmdc:sty-11-db67n062 no depth information
[ ] nmdc:sty-11-r2h77870 no min/max, has numeric value for 103/109 samples
[ ] nmdc:sty-11-8xdqsn54 no depth information
[ ] nmdc:sty-11-076c9980 no min/max, numeric 0 meters for all samples
[x] nmdc:sty-11-28tm5d36 has min/max for all samples
[ ] nmdc:sty-11-zs2syx06 has min/max AND numeric for all samples. remove numeric value?
[ ] nmdc:sty-11-547rwq94 no depth information
[ ] nmdc:sty-11-dcqce727 no min/max, 5 samples are high and may be cm
[ ] nmdc:sty-11-8fb6t785 no min/max, 0 meters for all samples
[ ] nmdc:sty-11-1t150432 no min/max, 1 sample is high and may be cm
[ ] nmdc:sty-11-33fbta56 has min/max for 24/124 samples, numeric for the rest
Sediment: range, required
[ ] nmdc:sty-11-5tgfr349 no min/max, has numeric values for 2/130 samples
[ ] nmdc:sty-11-547rwq94 no min/max, has numeric values for all samples
[x] nmdc:sty-11-pzmd0x14 has min/max for all samples
[ ] nmdc:sty-11-aygzgv51 no min/max, has numeric values for 50/85 samples
bmeluch
commented
1 month ago
While working on https://github.com/microbiomedata/issues/issues/612, I noticed that many samples are missing values for
depth, even in sample types where it is required.I'm guessing this is coming from some combination of the
depth/depth2change, NOM metadata generation problems, and/or projects we wanted to ingest even if they had some information missing.For each project, look up metadata from original sources to make sure all the information ends up in the right fields, then record findings here.
Here's the list, by sample type (as determined from
env_medium) and study:Water: point OR range, required
Soil: range, required
Sediment: range, required