reprocessing post re-id proteomics nmdc:sty-11-33fbta56

[aclum]

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RACI

Tag people in their roles

• Responsible: @picowatt
• Accountable: @SamuelPurvine
• Consulted: @aclum
• Informed: napa squad

Describe the the task

• [ ] Run proteomics workflow on 19 proteomics datasets. All annotations have completed.

Criteria for completion

• 19 MetaproteomicsAnalysisActivity records that join with OmicsProcessing records on part_of nmdc:sty-11-33fbta56

Estimate people time

• 1 person, 8 hours

Completion Date (Goal)

• Aug 9

Target Sprint Start & End Dates

• Start: July 15
• End: Aug 9

Tag Blocker/Contingent upon issues

[aclum]

Issues with site credentials, Cam created new ones today.

[picowatt]

Submitted DOs for MSGF+ param file, MASIC param file, and contam file with IDs nmdc:dobj-11-h9637w90, nmdc:dobj-11-hfx93f93, and nmdc:dobj-11-sprrem27 respectively.

[ssarrafan]

@picowatt @aclum this issue was just opened 4 days ago so I am assuming this won't be done today. If it's completed please let me know @picowatt or close the issue. Thanks!

[aclum]

These have been run and Cam will upload the results to mongo.

[picowatt]

Submitted JSON. Tested some URLs, all tested appear to resolve to our workflow outputs.

[aclum]

two more datasets to process.

[picowatt]

Submitted the last two, nmdc:wfmp-11-fz8k5p27.1 and nmdc:wfmp-11-z44t9n42.1