Chris and I met this week and went over the subset of KEGG BRITE that would be useful for NMDC functional search.
The suggestion yesterday was to include 1.2, 1.3, 1.4, 1.5, 1.6
my new suggestion is to use 1.1 00001 KEGG Orthology (KO) which does include 1.2, 1.3, 1.4, 1.5, 1.6 and 1.1 00002 KEGG modules. The data portal currently uses the json version of these two files but it doesn't include all the leaves, in particular for Enzymes.
aclum
commented
2 months ago
Chris and I met this week and went over the subset of KEGG BRITE that would be useful for NMDC functional search. The suggestion yesterday was to include 1.2, 1.3, 1.4, 1.5, 1.6 my new suggestion is to use 1.1 00001 KEGG Orthology (KO) which does include 1.2, 1.3, 1.4, 1.5, 1.6 and 1.1 00002 KEGG modules. The data portal currently uses the json version of these two files but it doesn't include all the leaves, in particular for Enzymes.
Identifiers refer to those that can be found with on the KEGG BRITE main page https://www.genome.jp/kegg/brite.html
@cmungall to confirm which BRITE identifiers to use and to identify who would make composite json file.
cc @naglepuff @turbomam @sierra-moxon