add eukcc component to binning workflow

[aclum]

JGI's eukcc database has been copied to /refdata/eukcc_db/eukcc2_db_ver_1.2

• [x] The mbin_nmdc task should be updated to use --eukccdb EUKCCDB to run eukcc.
• [x] mbin_nmdc task & workflow new output file eukcc_output/eukcc.csv.final
• [ ] create new file type enum for eukcc.csv.final in nmdc-schema
  • [x] The package task should be updated to make sure fungal bins get added to the final tarball

IMG taxon oids that can be used for testing, large assemblies but known to produce euk bins, or an existing metagenome can be spiked in with a small eukaryote for testing purposes. 3300067032 3300059473 3300059591 - this project produces just 1 euk bin Eukaryota; Ascomycota; Dothideomycetes; Pleosporales; Phaeosphaeriaceae; Parastagonospora

[chienchi]

The package task will add eukcc.csv.final to the final LQ_bin.zip file. So, the file will be part of this eum. In this case, we don't need to create a new file type enum, right?

example eukcc.csv.final file:

bin completeness    contamination   ncbi_lineage_taxIDs ncbi_lineage
bins.22.fa  0.0 0.0 1-131567-2759-554915-2605435-142796-33680-137627-5789-1115744   root,cellular organisms,Eukaryota,Amoebozoa,Evosea,Eumycetozoa,Myxogastria,Myxogastromycetidae,Physariida,Physaraceae
bins.10.fa  0.9 0.0 1-131567-2759-554915-2605435-142796-33083-2058181   root,cellular organisms,Eukaryota,Amoebozoa,Evosea,Eumycetozoa,Dictyostelia,Acytosteliales
bins.19.fa  0.84    0.0 1-131567-2759-2698737-33634-4762-4776-4777  root,cellular organisms,Eukaryota,Sar,Stramenopiles,Oomycota,Peronosporales,Peronosporaceae

[aclum]

That should be okay for now if it is included in the LQ_bin.zip file and follows a similar style to the mbin.sdb file being in the medium/high quality compression file. Longer term we need to think about how to store taxonomy information in the schema because taxonomy search is a requested feature for the data portal.