LC-MS workflow for metabolomics data dependent analysis

[ssarrafan]

Establish LC-MS workflow for metabolomics data dependent analysis:

• [X] Development of targeted data processing script
• [ ] Implementation of CoreMS objs (50%)
• [ ] WDL and metadata products

[ssarrafan]

@corilo based on the PNNL team meeting yesterday I assume I should move this issue to the October sprint. Can you please confirm?

[corilo]

Yes, please move it to the October sprint. Thanks!

Em qua., 29 de set. de 2021 às 16:51, ssarrafan @.***> escreveu:

@corilo https://github.com/corilo based on the PNNL team meeting yesterday I assume I should move this issue to the October sprint. Can you please confirm?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/microbiomedata/metaMS/issues/12#issuecomment-930628330, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEFQWITJKWZOJ52EB7UIAV3UEOQ7TANCNFSM5DG4DTOQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

[ssarrafan]

Hi @corilo Would you like this closed, or moved to another sprint?

[corilo]

Hi Setareh,

Please move it to november

I'll add details on the progress and create bullet points on it.

Basically the core algorithm is done, I'm halfway done with the data structure, then after that I need to add the CLI and WDL and connect the molecular reference database.

On Fri, Oct 29, 2021 at 1:49 PM ssarrafan @.***> wrote:

Hi @corilo https://github.com/corilo Would you like this closed, or moved to another sprint?

— You are receiving this because you were mentioned.

Reply to this email directly, view it on GitHub https://github.com/microbiomedata/metaMS/issues/12#issuecomment-955039515, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEFQWIVNK4WIBXADZGTJOVDUJMCFJANCNFSM5DG4DTOQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

[ssarrafan]

Moving this to December sprint to finish the additional tasks outlined per @corilo via Slack

[ssarrafan]

Hi @corilo. Do you anticipate this issue can be closed by Thursday? Or does it need to be continued it to January?

[corilo]

It won't be done by Thursday, please move it to January.

Thanks!!!

Em ter., 14 de dez. de 2021 às 10:55, ssarrafan @.***> escreveu:

Hi @corilo https://github.com/corilo. Do you anticipate this issue can be closed by Thursday? Or does it need to be continued it to January?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/microbiomedata/metaMS/issues/12#issuecomment-993881918, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEFQWIRFTV54KZFPRSBASV3UQ6HKLANCNFSM5DG4DTOQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

[ssarrafan]

Adding to the February sprint per @corilo

[ssarrafan]

@corilo it's mid-sprint so I wanted to check to see if you had any blockers or needed any help with this issue. Please let me know if I can help with anything. Thanks!

[ssarrafan]

@corilo are you still working on this issue? should it be moved to the March sprint?

[ssarrafan]

I'll move this to March but let me know if you're not working on it during March. @corilo

[ssarrafan]

Moving to April per @corilo.

[ssarrafan]

@corilo do you have any updates on this issue? I am trying to close out the sprint on time since I'll be off next week. Thanks for your help.

[ssarrafan]

Removing from sprint. @corilo let me know if you plan to work on this in May