Design and enable metadata generation for lipidomics workflow

kheal commented 6 months ago

What is left:

[x] https://github.com/microbiomedata/issues/issues/805

kheal commented 4 months ago

These metadata changes will be in alignment with the Berkeley schema

brynnz22 commented 3 months ago

editing to create smaller subtasks of what is left to do. Most of the lipidomics has been designed and written, what is left to do is:

[x] Add functionality for processed data to lipidomics metadata gen script
[ ] Add functionality for MaterialProcessing functionality to lipidomics metadata gen script
[ ] Add documentation to lipidomics metadata gen script
[ ] Add optional parameter functionality if biosamples already exist or will need to be created for lipidomics metadata gen script.

Can create issues for these as needed.

mslarae13 commented 1 month ago

@brynnz22 can we move this meta-issue into in progress if it has sub-issues that you'll be adding and are still in progress? Or is there a task for this that is in review or ready to close?

brynnz22 commented 1 month ago

Its done, its just in review with requested changes that I need to do.

mslarae13 commented 2 weeks ago

Hi @brynnz22 , Still in review?

brynnz22 commented 2 weeks ago

Yep! I will have it done by the retreat.

microbiomedata / metaMS

Design and enable metadata generation for lipidomics workflow #29