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microbiomedata / metaMS

GC-MS Based Metabolomics Workflow
BSD 2-Clause "Simplified" License
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Modify metadata generation scripts for GC-MS Metabolomics workflow to berkeley-schema-fy24 #55

Closed kheal closed 2 months ago

kheal commented 4 months ago

Dependent on: https://github.com/microbiomedata/metaMS/issues/57

Note: Double check StationaryPhaseEnum is Polysiloxane for this. True according to the SOP, but we'll need to check.

kheal commented 3 months ago

We will need to make change sheets for the existing metadata as well. Related to https://github.com/microbiomedata/nmdc-schema/issues/1852 .

kheal commented 2 months ago

@brynnz22 and I decided this was outside the scope for the Berkeley rollout. The current script needs a heavy overhaul and can be addressed the next time GCMS data processing and ingest are prioritized. The intention is that we will use the new lipidomics metadata generation script as a blueprint for for a revamped GCMS metabolomics metadata generation script.

@corilo please chime in if you disagree.