test and process spruce dataset on pnnl-MSC(Tahoma).

microbiomedata / metaPro

Workflow for meta-proteomics analysis

BSD 2-Clause "Simplified" License

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test and process spruce dataset on pnnl-MSC(Tahoma). #16

Closed anubhav0fnu closed 2 years ago

anubhav0fnu commented 3 years ago

tahoma

anubhav0fnu commented 3 years ago

things to do!

test run of MetaPro on Tahoma.
Process
- [] Spruce dataset
- [] Prosser uniref.
- [X] update stegen
add documentation: "How to process a new dataset using MetaPro on Tahoma"
collect stats for newer runs (disk access, memory, N/w bandwidth, cpu time) form

ssarrafan commented 3 years ago

Moving to November to complete per plan from @anubhav0fnu

https://github.com/microbiomedata/metaPro/issues/16 run from Oct end & will be finished by Nov sprint.

ssarrafan commented 3 years ago

Moving to December sprint per @anubhav0fnu via Slack

ssarrafan commented 2 years ago

Heard from Yuri that Anubhav is out till January so I am moving this to the January sprint. @anubhav0fnu if you have any updates on this please add to the comments.

ssarrafan commented 2 years ago

@anubhav0fnu today we had mid-sprint check-in. I'm following up to see if you have any blockers or need any help with this GitHub issue. Please let me know. Thanks!

ssarrafan commented 2 years ago

@anubhav0fnu any update on this issue?

anubhav0fnu commented 2 years ago

@anubhav0fnu any update on this issue?

[X] test run of MetaPro on Tahoma.

Process:

[X] Spruce dataset
[X] update stegen
[X] add documentation: "How to process a new dataset using MetaPro on Tahoma"
[ ] Prosser uniref.
[ ] collect stats for newer runs (disk access, memory, N/w bandwidth, cpu time) form