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microbiomedata / metaPro

Workflow for meta-proteomics analysis
BSD 2-Clause "Simplified" License
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Benchmarking2.0: collect additional stats for newer runs (disk access, memory, N/w bandwidth, cpu time). #20

Closed anubhav0fnu closed 1 year ago

ssarrafan commented 2 years ago

@anubhav0fnu it's mid-sprint time so I'm just checking to see if you think you will be able to finish this issue in March? Are you blocked by anything? Do you need help with anything?

ssarrafan commented 2 years ago

@pdpiehowski said to re-assign this to @Grant.Fujimoto@pnnl.gov. Will move to the April sprint and re-assign when Grant joins GH.

ssarrafan commented 2 years ago

Removing from the sprint. @pdpiehowski and @GrantFujimoto let me know if you plan to work on this in May. Adding the backlog label for now.

GrantFujimoto commented 1 year ago

Have current pipeline building and running a testing set of data with associated run times and other metrics. Working on expanding the test set as well as getting more in depth timing and memory metrics.

ssarrafan commented 1 year ago

Moving to new sprint, @GrantFujimoto let me know if you're not working on this currently

ssarrafan commented 1 year ago

@GrantFujimoto still testing? Should this issue continue to be active in the next sprint?

pdpiehowski commented 1 year ago

The benchmarking is now completed and the decided upon parameters are now implemented in the pipeline.