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microbiomedata / metaT

Metatranscriptomics workflow
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placeholder ticket for updating annotation version for the metatranscriptome workflow #32

Closed aclum closed 2 weeks ago

aclum commented 4 months ago

We need to update to a branch of mg_annotation that 1) uses a date product names list, currently using /refdata/img//Product_Name_Mappings/latest 2) names the genes with a nmdc:wfmgan 3) generates the mapping file

kaijli commented 4 months ago

in process with mapping ticket, updating to v1.0 and incorporating mapping

kaijli commented 3 months ago

Done, https://github.com/microbiomedata/mg_annotation/pull/29, only thing that needs to be checked is #1, unsure about this

uses a date product names list, currently using /refdata/img//Product_Name_Mappings/latest

aclum commented 2 months ago

Now that everything is in wdl 1.0 you should be able to import the wdl from the annotation repo https://github.com/microbiomedata/mg_annotation/blob/ecef194c0fb3c189f977ab194bac39d2cc3f3211/annotation_full.wdl

kaijli commented 2 months ago

https://github.com/microbiomedata/metaT/blob/16673ebc68492819ec850dd2afd92d506beb5147/metaT_wrapper.wdl#L5 done for public repos