Example inputs.json in both the master and werkflow branch is not valid.
The first issue is that there is an extra closing bracket so the file is not valid json.
The second issue is that 'annotation.imgap_input_fasta' is not valid for the annotation.wdl, it should be 'annotation.input_file' based on the wdl or vice versa. Either the inputs.json or the wdl needs to be updated.
aclum
commented
1 year ago
Example inputs.json in both the master and werkflow branch is not valid. The first issue is that there is an extra closing bracket so the file is not valid json. The second issue is that 'annotation.imgap_input_fasta' is not valid for the annotation.wdl, it should be 'annotation.input_file' based on the wdl or vice versa. Either the inputs.json or the wdl needs to be updated.