Update to new version of img-nr database

[aclum]

Deliverable this task is associated with

1

RACI

Responsible: @Michal-Babins Accountable: @aclum Consulted: @hubin-keio Informed:

Describe the task?

• [x] Update the version of the img-nr database for the annotation pipeline. This will be provided by Marcel and should be copied to /global/cfs/cdirs/m3408/refdata/img/IMG-NR/YYYYMMDD
• [x] update functional-annotation.wdl to use the new version, input variables are variables are
• [x] update to lastal 1456

  
  ko_ec_img_nr_db
  ko_ec_md5_mapping
  ko_ec_taxon_to_phylo_mapping

Criteria for completion

A test annotation workflow run completes successfully and the imgap_version file has a img-nr database version has a year matching 2023

Completion Date (Goal)

July 7
Target Sprint Start & End Dates

Start: July 3
End: July 14
Tag Blocker/Contingent upon issues
Dependent on new database version release from @mhuntemann 

[aclum]

@Michal-Babins I've copied over the new version of the img-nr database to /global/cfs/cdirs/m3408/refdata/img/IMG-NR/20230629/ Marcel said it is 45% larger than the previous version and he is seeing longer run times for lastal. Please update the wdl to use this new version.

[ssarrafan]

@aclum @Michal-Babins what is the status of this issue? I don't see any updates this sprint. Still active? Or label with backlog?

[aclum]

This was completed in in sprint 15. Workflow runs in July and August use the updated version of lastal and the IMG-NR database.