Closed aclum closed 1 year ago
@Michal-Babins This version is available in this branch https://code.jgi.doe.gov/img/img-pipelines/img-annotation-pipeline/-/tree/scaffold-lineage
@aclum updated the docker image sha
@aclum @Michal-Babins what's the status of this issue? any updates?
Scaffold lineage file has been added with the mg_annotation version 5.2.0. Scaffold lineage tsv accepted now as input to mags.
Marcel next week should be providing an updated version that outputs a lineage file. The wdl workflow should be updated to have this as an output and the runtime automation should make a data object for this file. A file enum,Lineage sdb, has been made already.
Blocked on updates from Marcel and runtime API being updated to schema version 7.7