Open aclum opened 1 week ago
In October JGI is updating to annotation 5.3 to sync with that we need to add a WLD for genomad that gets run as part of annotation pipeline.
Recommend setting this up as a separate WDL, having that WDL be imported to full_annotation.wdl
WDL task to wrap genomad.sh https://code.jgi.doe.gov/img/img-pipelines/img-annotation-pipeline/-/blob/5.3/bin/genomad/genomad.sh?ref_type=heads
Program and DB file will need to be added to the info file.
There should be a boolean flag to execute this.
In October JGI is updating to annotation 5.3 to sync with that we need to add a WLD for genomad that gets run as part of annotation pipeline.
Recommend setting this up as a separate WDL, having that WDL be imported to full_annotation.wdl
WDL task to wrap genomad.sh https://code.jgi.doe.gov/img/img-pipelines/img-annotation-pipeline/-/blob/5.3/bin/genomad/genomad.sh?ref_type=heads
Program and DB file will need to be added to the info file.
There should be a boolean flag to execute this.