Workflows - Test large data sets for workflows (mg_annotation)

microbiomedata / mg_annotation

Metagenome Annotation Workflow

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Workflows - Test large data sets for workflows (mg_annotation) #4

Closed ssarrafan closed 3 years ago

ssarrafan commented 3 years ago

create a large test data set with expected outcome if workflow run is successful

link test results to this issue

hubin-keio commented 3 years ago

Will be tested at SDSC once the system (Cromwell etc.) is set up. Likely to get started near the last week of the Sprint.

ssarrafan commented 3 years ago

Moving to June sprint per @hubin-keio

hubin-keio commented 3 years ago

Test run succeed in command line. However, one JSON file was not generated from the version of WDL file used in EDGE NMDC. We'll need to sync the WDLs and Docker images of this workflows in next Sprint.

ssarrafan commented 3 years ago

Closing per Bin's note that this is done. @hubin-keio let me know if we need a new issue for July to sync the WDLs and Docker images.