all-combos schema JSON too large to push to GitHub - Githubissues

microbiomedata / mixs-6-2-release-candidate

Proposed, Harmonized MIxS 6.2

https://github.com/GenomicsStandardsConsortium/mixs6.2_release_candidate

MIT License

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all-combos schema JSON too large to push to GitHub #144

Open turbomam opened 1 year ago

turbomam commented 1 year ago

data_harmonizer/schemas/mixs_6_2_rc.json
schema-derivatives/mixs_6_2_rc.json

turbomam commented 1 year ago

Include top 30% each of checklists and environmental packages in the combinations? Build time = 10 minutes.

Top v6 checklists of Mid July

checklist	count
MIMARKS.survey	799118
MIMS.me	623687
MIGS.eu	194590
MIMARKS.specimen	180969
MIMAG	141059
MIGS.ba	117192
MISAG	17395
MIGS.vi	6830
MIUVIG	1964

Top v6 environmental packages of Mid July

environmental package	count
host-associated	420604
human-gut	310529
soil	225613
plant-associated	173276
water	168886
human-associated	154794
human-oral	74204
miscellaneous	73059
sediment	61867
wastewater	53985
human-vaginal	47707
human-skin	36217
microbial	19882
built	11253
air	7785
riculture	672
agriculture	667
food-human_foods	598
food-farm_env	594
symbiont-associated	399
food-animal	276
food-prod_facility	94