slots not present in curated-data/build-test-only/AllSlotsTestClassCollection-wrapped-example-data.yaml

microbiomedata / mixs-6-2-release-candidate

Proposed, Harmonized MIxS 6.2

https://github.com/GenomicsStandardsConsortium/mixs6.2_release_candidate

MIT License

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slots not present in curated-data/build-test-only/AllSlotsTestClassCollection-wrapped-example-data.yaml #178

Closed turbomam closed 1 year ago

turbomam commented 1 year ago

see other-reports/build-test-data-coverage-report.yaml

optional_not_present:
- physical_sex
- soil_text_measure
- texture
recommended_not_present:
- soil_depth

turbomam commented 1 year ago

physical sex:

soil_text_measure: MIXS:0000335

texture: MIXS:0000335

soil_depth: MIXS:0000018

only1chunts commented 1 year ago

MIXS:0000335: changed structured comment name to "soil_texture" and label to "soil texture" in soil and ag packages, see ticket #529

only1chunts commented 1 year ago

physical sex - this is an ongoing discussion with the Urobiom package people as our current definition of host_sex includes "Gender" which can be different to biological sex. Not sure what the solution will be to the definitions and names of any terms related to sex and gender.