update GOTTCHA2 database with fungal genomes

microbiomedata / nmdc-edge

Web-based interface to the NMDC EDGE platform

https://nmdc-edge.org

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update GOTTCHA2 database with fungal genomes #105

Open mflynn-lanl opened 8 months ago

mflynn-lanl commented 8 months ago

Is your feature request related to a problem? Please describe. Update GOTTCHA2 database to use new one that contains fungal genomes

Describe the solution you'd like Copy new database to NMDC-EDGE and update ReadbasedAnalysis.wdl to use new database

poeli commented 8 months ago

Please try the updated the docker image docker pull poeli/nmdc_taxa_profilers:1.0.6. If it works well, please tag it to microbiomedata.

aclum commented 7 months ago

One of the talks at GSP seemed to indicate that this happened. We need to make sure that changes aren't only made in EDGE but are coordinated with the the workflows nmdc is running at NERSC as well. @mflynn-lanl @poeli please update the ticket with the current status.