Add illumina reads header check for QC - Githubissues

microbiomedata / nmdc-edge

Web-based interface to the NMDC EDGE platform

https://nmdc-edge.org

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Add illumina reads header check for QC #192

Closed chienchi closed 3 months ago

chienchi commented 3 months ago

Data from SRA: https://dev.nmdc-edge.org/user/project?code=vW90gO6K0Ifabp4O

The isIllumina in the main_workflow.readsqc_preprocess is false. (https://dev.nmdc-edge.org/projects/vW90gO6K0Ifabp4O/cromwell_job_metadata.json)

Data from Illumina MiSeq: https://dev.nmdc-edge.org/user/project?code=ALOUPsEeU2sFzQgk

The isIllumina in the main_workflow.readsqc_preprocess is true. (https://dev.nmdc-edge.org/projects/ALOUPsEeU2sFzQgk/cromwell_job_metadata.json)