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microbiomedata / nmdc-edge

Web-based interface to the NMDC EDGE platform
https://nmdc-edge.org
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sync-mags-nmdc #37

Open mflynn-lanl opened 11 months ago

mflynn-lanl commented 11 months ago

sync WDL file with the one used by NMDC, update templates and web interface to accommodate new input files from the NMDC WDL.

mflynn-lanl commented 11 months ago

I have updated the nmdc-edge mbin_nmdc.wdl with the version from the NMDC metaMAGs repo. I have updated the WDL and inputs.json templates and the metagenome_pipeline template files. These have all been successfully tested on Expanse. The only thing that remains to be done is to update the website so that in the GUI, the Metagenome MAGs workflow has the additional input files necessary for the new WDL: proteins_file, cog_file, ec_file, ko_file, pfam_file, tigrfam_file, cath_funfam_file, smart_file, supfam_file, product_names_file, gene_phylogeny_file, lineage_file, domain_file

yxu-lanl commented 10 months ago

Changes pushed to the branch.