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microbiomedata / nmdc-metadata

Managing metadata and policy around metadata in NMDC
https://microbiomedata.github.io/nmdc-schema/
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Process NEON data and make available in portal #401

Closed ssarrafan closed 1 year ago

ssarrafan commented 2 years ago

Process NEON data into portal

All data in NCBI: https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=ERP024395

David to use this GOLD study https://gold.jgi.doe.gov/study?id=Gs0144570 - was curated with EnvO terms by Jagadish.

Reassign to Bin/Shane/Kitware as needed.

ssarrafan commented 2 years ago

@emileyfadrosh and @dehays I know we are still trying to get in touch with NEON so I will move this to the November sprint. If it should be in the backlog instead please let me know.

emileyfadrosh commented 2 years ago

Let's move this to the backlog. It's not clear the timing on re-engagement with a relevant NEON POC. Thanks.

dehays commented 2 years ago

I do not know what the current status of NEON data is. NEON is not among the data sources I've heard discussed recently.

Assigning to Emiley so she can assign when NEON data work is needed

aclum commented 1 year ago

Deprecating this ticket in favor of the squad work happening in 2023. We will be using NEON directly which has more comprehensive data compared to the subset of records in NCBI.